ABOUT THIS RECORDspecies: Helianthus petiolaris
source: microPC, original name: miR166
Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGCTCGAG mismatches: 4 bulges: 0 |
pre-miRNA
GGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATAATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGATCAATGATTA
AAGATTAGAATCTTGTGTTGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..(((.(.(((((((....(((((((((((..(((..(((((.........))))).(((((((((....))))))))).)))))
)))))).)))))))))).).)))..))))))..)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATAATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGATCAATGATTA
AAGATTAGAATCTTGTGTTGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..(((.(.(((((((....(((((((((((..(((..(((((.........))))).(((((((((....))))))))).)))))
)))))).)))))))))).).)))..))))))..)))))))
SIMILARITIES| miRBase sly-MIR166b: 0.0000001 PMRD sly-miR166b: 0.0000001 microPC miR166: 1e-75 | UniProt no hits RFAM mir-166: 0.000002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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