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ABOUT THIS RECORD

ID: MNEST044995
species: Carthamus tinctorius
miRNA family: MIR396
source: microPC, original name: miR396

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTCCACAGCTTTCTTGAACT

miRNA*
TTCAACAAAGCTGTGGGA

mismatches: 1
bulges: 0

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pre-miRNA
TTCCACAGCTTTCTTGAACTGCATGGTTCAATGTTGATCTGTTGGATCTGTGTTGTTTTTTTGGCTTAAATCTTTGCAGTTCAACAAAGCTGTGGGA

dot-bracket secondary structure
((((((((((((.((((((((((.(((((((..(.((((.....)))).)..))).............))))..)))))))))).))))))))))))


SIMILARITIES
miRBase aqc-MIR396a: 0.00000002

PMRD aqc-miR396a: 0.00000002

microPC miR396: 1e-37
UniProt no hits

RFAM MIR396: 0.000005

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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