ABOUT THIS RECORDspecies: Cycas rumphii
source: microPC, original name: miR166
Taxonomy by NCBI:
Cycas rumphii Cycas Cycadaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGCTCGACT mismatches: 4 bulges: 0 |
pre-miRNA
GGGAATGTTGTCTGGCTCGACTCGATCCACAGACTTTTGGTTGGAGGGTGCTGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..((((...((((.(.(((.....))).).))))...))))..))))))..)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGAATGTTGTCTGGCTCGACTCGATCCACAGACTTTTGGTTGGAGGGTGCTGTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((..((((...((((.(.(((.....))).).))))...))))..))))))..)))))))
SIMILARITIES| miRBase sly-MIR166b: 0.00001 PMRD smo-miR166c: 0.00001 microPC miR166: 5e-36 | UniProt no hits RFAM mir-166: 0.0002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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