ABOUT THIS RECORDspecies: Cycas rumphii
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Cycas rumphii Cycas Cycadaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGCTCGACT mismatches: 4 bulges: 0 |
pre-miRNA
GGAATGTTGTCTGGCTCGACTCGATCCACAGACTTTTGGTTGGAGGGTGCTGTCGGACCAGGCTTCATTCC
dot-bracket secondary structure
((((((..((((((..((((...((((.(.(((.....))).).))))...))))..))))))..))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAATGTTGTCTGGCTCGACTCGATCCACAGACTTTTGGTTGGAGGGTGCTGTCGGACCAGGCTTCATTCC
dot-bracket secondary structure
((((((..((((((..((((...((((.(.(((.....))).).))))...))))..))))))..))))))
SIMILARITIES| miRBase vvi-MIR166b: 0.00005 PMRD vvi-miR166b: 0.00005 microPC miR166: 7e-35 | UniProt no hits RFAM mir-166: 0.0009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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