ABOUT THIS RECORDspecies: Vitis shuttleworthii
source: microPC, original name: miR394
Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGTGGGCATACTGCCAA mismatches: 3 bulges: 0 |
pre-miRNA
TTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTGGGCATACTGCCAA
dot-bracket secondary structure
.(((((.(.(((((((((((((......(((((......)))))....)).))))))))))).).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTGGGCATACTGCCAA
dot-bracket secondary structure
.(((((.(.(((((((((((((......(((((......)))))....)).))))))))))).).))))).
SIMILARITIES| miRBase vvi-MIR394b: 7e-35 PMRD vvi-miR394b: 7e-35 microPC miR394: 0.0000002 | UniProt no hits RFAM MIR394: 1e-33 |
Identical with: vvi-miR394b from PMRD (MNEST054852) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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