ABOUT THIS RECORDspecies: Populus x canadensis
source: microPC, original name: miR395
Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGGTTTGGAGGAACTC miRNA* GTTCCTCCTAGCTTCTTC mismatches: 3 bulges: 0 |
pre-miRNA
GAGTTCCTCCTAGCTTCTTCAGTACCCGTGGAAAGCTAATGCTGCAATTATCTTGAGCTGGTAAGACTGGCAGGTGTCAGATTTGGATGTGTTAAAGGGT
TTGGAGGAACTC
dot-bracket secondary structure
((((((((((.((((..((...((((.((...(((.((((......)))).)))..)).))))...(((((....))))).............))..)))
).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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GAGTTCCTCCTAGCTTCTTCAGTACCCGTGGAAAGCTAATGCTGCAATTATCTTGAGCTGGTAAGACTGGCAGGTGTCAGATTTGGATGTGTTAAAGGGT
TTGGAGGAACTC
dot-bracket secondary structure
((((((((((.((((..((...((((.((...(((.((((......)))).)))..)).))))...(((((....))))).............))..)))
).))))))))))
SIMILARITIES| miRBase ptc-MIR395a: 6e-46 PMRD ptc-miR395a: 6e-46 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
