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ABOUT THIS RECORD

ID: MNEST045340
species: Oryza sativa
source: microPC, original name: miR166

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CGGACCAGGCTTCATTCCC

miRNA*
GAATGTTGTCTGGTTCAAT

mismatches: 4
bulges: 0

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pre-miRNA
GGAATGTTGTCTGGTTCAATGTCTCATACACCTTGTGGTTTTGAGGATGATTTGTGCAAGGTTTTTCATTCCTCTCATCCGTGGGATCTCGGACCAGGCT
TCATTCCC


dot-bracket secondary structure
((((((..(((((((((...(((((((..(((....)))...((((((((...............))).)))))......)))))))...))))))))).
.)))))).



SIMILARITIES
miRBase osa-MIR166a: 1e-49

PMRD osa-miR166a: 1e-49

microPC miR166: 1e-56
UniProt no hits

RFAM mir-166: 4e-53

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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