ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR169
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCG miRNA* GCAAGTTGTCCTTGGCT mismatches: 3 bulges: 0 |
pre-miRNA
CAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTC
CTTGGCT
dot-bracket secondary structure
.(((((((((..(((((((((...((((..(((((..((..(((((.....)))))..(....).....))..)))))..))))...)))))))))..))
)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCGGCAAGTTGTC
CTTGGCT
dot-bracket secondary structure
.(((((((((..(((((((((...((((..(((((..((..(((((.....)))))..(....).....))..)))))..))))...)))))))))..))
)))))))
SIMILARITIES| miRBase osa-MIR169b: 4e-56 PMRD osa-miR169b: 4e-56 microPC miR169: 4e-56 | UniProt no hits RFAM MIR169_2: 7e-55 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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