ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR167
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCT miRNA* GTCATGCTGTAGTTTCA mismatches: 1 bulges: 1 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGATGATGATGATGATCCACCTCTCTCATCTGTGTTCTTGATTAATTACGGATCAATCGATCAGGTCATGCTGTAGTTTCA
dot-bracket secondary structure
.((((((((.(((((((((((((..((((..((((((.......(((..........)))........))))))))))))))))))))))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
TGAAGCTGCCAGCATGATCTGATGATGATGATGATCCACCTCTCTCATCTGTGTTCTTGATTAATTACGGATCAATCGATCAGGTCATGCTGTAGTTTCA
dot-bracket secondary structure
.((((((((.(((((((((((((..((((..((((((.......(((..........)))........))))))))))))))))))))))))))))))).
SIMILARITIES| miRBase osa-MIR167h: 4e-31 PMRD osa-miR167m: 4e-31 microPC miR167: 4e-31 | UniProt no hits RFAM MIR167_1: 7e-30 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
