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ABOUT THIS RECORD

ID: MNEST045360
species: Triphysaria pusilla
source: microPC, original name: miR171

Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCATG

miRNA*
TGATGTTGGAACGGCTCAATC

mismatches: 1
bulges: 0

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pre-miRNA
TATGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCATG

dot-bracket secondary structure
(((((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).)))))))))))


SIMILARITIES
miRBase vvi-MIR171i: 4e-21

PMRD vvi-miR171i: 4e-21

microPC miR171: 1e-39
UniProt no hits

RFAM MIR171_1: 8e-20

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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