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ABOUT THIS RECORD

ID: MNEST045378
species: Oryza sativa
source: microPC, original name: miR171

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCAC

miRNA*
GATGTTGGCATGGTTCAATC

mismatches: 2
bulges: 0

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pre-miRNA
GATGTTGGCATGGTTCAATCAAACCGGGCAAACTTATGCACTAGCTAAGCAAGATGCAGGGATATGCAGTATGGTTTTGTTTGGTCTGATTGAGCCGTGC
CAATATCAC


dot-bracket secondary structure
(((((((((((((((((((((.((((((((((.((((((....((...))....((((......)))))))))).)))))))))).))))))))))))))
)))))))..



SIMILARITIES
miRBase osa-MIR171f: 3e-57

PMRD osa-miRf10461-akr: 3e-57

microPC miR171: 3e-57
UniProt no hits

RFAM MIR171_1: 4e-56

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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