ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: microPC, original name: miR156
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTCTCTATCTGTCA mismatches: 2 bulges: 1 |
pre-miRNA
TGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.((((((....(((((((((((....).)))))))))))))))).))))))))))))).)))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.((((((....(((((((((((....).)))))))))))))))).))))))))))))).)))))).
SIMILARITIES| miRBase osa-MIR156b: 1e-43 PMRD osa-miRf10227-akr: 1e-43 microPC miR156: 1e-43 | UniProt no hits RFAM mir-156: 2e-42 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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