ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: miR530-3p
source: microPC, original name: miR530
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGTGCAGAGGCAGATGCAAC miRNA* TGCATTTGCACCTGCACCTAC mismatches: 4 bulges: 0 |
pre-miRNA
GCTGCATTTGCACCTGCACCTACAGAGAGGAAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACACAATGTTGTTC
CTGGTCCCTTCCTGATCCCTAGGTGCAGAGGCAGATGCAAC
dot-bracket secondary structure
..(((((((((..(((((((((..((.((((((..(((((((((.(....).....((((..((..((((.....)))).))..))))....))))))))
)......))))))..))..)))))))))..)))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
GCTGCATTTGCACCTGCACCTACAGAGAGGAAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACACAATGTTGTTC
CTGGTCCCTTCCTGATCCCTAGGTGCAGAGGCAGATGCAAC
dot-bracket secondary structure
..(((((((((..(((((((((..((.((((((..(((((((((.(....).....((((..((..((((.....)))).))..))))....))))))))
)......))))))..))..)))))))))..)))))))))..
SIMILARITIES| miRBase osa-MIR530: 2e-71 PMRD osa-miRf10677-akr: 2e-71 microPC miR1030: 2e-74 | UniProt no hits RFAM no hits |
Identical with: miR1030 from microPC (MNEST044806) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
