ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR160
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCC miRNA* CGTGCGAGGAGCCAAGCA mismatches: 3 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTC
TACTGCGGATGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((((((..(((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).))))...))))))).)
))).)))..))))))))).))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTC
TACTGCGGATGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((((((..(((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).))))...))))))).)
))).)))..))))))))).))))))).)).
SIMILARITIES| miRBase osa-MIR160d: 9e-70 PMRD osa-miR160n: 9e-70 microPC miR160: 9e-70 | UniProt no hits RFAM mir-160: 2e-68 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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