ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR171
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATC miRNA* TGTTGGCTCGGCTCACTC mismatches: 2 bulges: 0 |
pre-miRNA
GATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTACCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
(((((((((.(((((((.(((((.(((((....((((.((((.(((((....)))))))))....))))..)))))))))).))))))).)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATGTTGGCTCGGCTCACTCAGACGGCATTGGCGTGATGCAAAGCATGCATGCGTGCTTGCTACCTCACTTGTGTTTCTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
(((((((((.(((((((.(((((.(((((....((((.((((.(((((....)))))))))....))))..)))))))))).))))))).)))))))))
SIMILARITIES| miRBase osa-MIR171e: 5e-49 PMRD osa-miR171n: 5e-49 microPC miR171: 2e-51 | UniProt no hits RFAM MIR171_1: 9e-48 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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