ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR160
source: microPC, original name: miR160
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GNGTGCACGGAGCCAAGCA mismatches: 4 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGNGTGCACGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((.(((..(((((((.(((((...(((....)))..)))))))).))))..))).))))).))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
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deep sequencing data evidence
TGCCTGGCTCCCTGTATGCCACTCATCTAGAGCAACAAACTTCTGCGAGAGGTTGCCTATGATGGATGGNGTGCACGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((.(((..(((((((.(((((...(((....)))..)))))))).))))..))).))))).))))))).)).
SIMILARITIES| miRBase osa-MIR160c: 2e-42 PMRD osa-miR160c: 2e-42 microPC miR160: 2e-42 | UniProt no hits RFAM mir-160: 3e-41 |
MOREmiRNEST target predictions
non-miRNEST targets
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deep sequencing data evidence
