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ABOUT THIS RECORD

ID: MNEST045551
species: Lotus japonicus
miRNA family: MIR408
source: microPC, original name: miR408

Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGCACTGCCTCTTCCCTGGC

miRNA*
CAGGAAAGAGGCAGAGCATGG

mismatches: 4
bulges: 0

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pre-miRNA
GCAGGAAAGAGGCAGAGCATGGATGGAGCTATCAACAAAATAAATTGAGAATGGGAGATGTTTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGC

dot-bracket secondary structure
.((((.(((((((((.(((((..((((((((.(((((((....(((..........))).)))))))))))))))..))))).))))))))).))))..


SIMILARITIES
miRBase ptc-MIR408: 0.0000000003

PMRD ppe-miR408: 0.00000000000002

microPC miR408: 2e-51
UniProt no hits

RFAM MIR408: 9e-48

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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