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ABOUT THIS RECORD

ID: MNEST045602
species: Lactuca serriola
miRNA family: MIR398
source: microPC, original name: miR398

Taxonomy by NCBI:
Lactuca serriola Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCACCCCT

miRNA*
GAGTGACACTAAGAACACATA

mismatches: 2
bulges: 1

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pre-miRNA
AGGAGTGACACTAAGAACACATATGGTTGAATTGCTATCTCCACTGCATATTCATATGTTGTACAGTACAAATTTTCGATGCACATACAGTTGTTTGTGA
GACATTGTGTGAACCATCCATTTGTGTTCTCAGGTCACCCCT


dot-bracket secondary structure
(((.(((((.((.((((((((.((((.((................((((.........(((((...))))).......)))).((((((((.(((.....
)))))))))))...)).)))).)))))))).))))))).)))



SIMILARITIES
miRBase aqc-MIR398a: 0.000002

PMRD aqc-miR398a: 0.000002

microPC miR398: 7e-77
UniProt no hits

RFAM MIR398: 0.0005

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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