ABOUT THIS RECORDspecies: Coffea canephora
source: microPC, original name: miR1318
Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGGAGAGATGAAACCGA miRNA* GGTGTCATCGTCCTG mismatches: 2 bulges: 1 |
pre-miRNA
CAGGAGAGATGAAACCGAAGATTATTCCGGTTTCTACAGCCAAGAGATAGGGATGGTCGTCGGTGTCATCGTCCTG
dot-bracket secondary structure
(((((..(((((.(((((.(((((((((.((((((.......)))))).))))))))).))))).))))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGAGAGATGAAACCGAAGATTATTCCGGTTTCTACAGCCAAGAGATAGGGATGGTCGTCGGTGTCATCGTCCTG
dot-bracket secondary structure
(((((..(((((.(((((.(((((((((.((((((.......)))))).))))))))).))))).))))).)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
