ABOUT THIS RECORDspecies: Lactuca saligna
source: microPC, original name: miR159
Taxonomy by NCBI:
Lactuca saligna Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGGGTGAAGGGAGCTC miRNA* GCTCTCTATCGCCTCAACCC mismatches: 1 bulges: 1 |
pre-miRNA
GAGCTCTCTATCGCCTCAACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCCTGTAGGTGCACCAATGGTGTTGTAGTGTG
CATTCTAAGGTTAGCATGAAGGTGGAGCTGTGGTTCGATCATCCTTTTGGGATTGGGGTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((.(((((((((.((..((((((.(((((..........((((((((.(.((((((((...((((.((((((((((.((......)).).)))
)).))))))))...)))))))).).)))))))).)))))..))))))..)).))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTCTCTATCGCCTCAACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCCTGTAGGTGCACCAATGGTGTTGTAGTGTG
CATTCTAAGGTTAGCATGAAGGTGGAGCTGTGGTTCGATCATCCTTTTGGGATTGGGGTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((.(((((((((.((..((((((.(((((..........((((((((.(.((((((((...((((.((((((((((.((......)).).)))
)).))))))))...)))))))).).)))))))).)))))..))))))..)).))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC miR159: 2e-93 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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