ABOUT THIS RECORDspecies: Helianthus ciliaris
source: microPC, original name: miR398
Taxonomy by NCBI:
Helianthus ciliaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGTTCTCAGGTCGCCCCTG miRNA* GGTGTGACATGAGAACACAT mismatches: 2 bulges: 0 |
pre-miRNA
CAGGTGTGACATGAGAACACATGATATACTTAGATATTTTCACGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
((((.(((((.(((((((((.(((.(((......)))..))).))))))))).))))).))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGTGTGACATGAGAACACATGATATACTTAGATATTTTCACGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
((((.(((((.(((((((((.(((.(((......)))..))).))))))))).))))).))))
SIMILARITIES| miRBase rco-MIR398b: 0.00001 PMRD ptc-miR398b: 0.00004 microPC miR398: 6e-29 | UniProt no hits RFAM MIR398: 0.0002 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
