ABOUT THIS RECORDspecies: Hordeum vulgare
source: microPC, original name: miR1439
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACGGAGGGAGTAT miRNA* ACTCCCTCCGTCCCAAAATA mismatches: 0 bulges: 0 |
pre-miRNA
GTACTCCCTCCGTCCCAAAATAAGTCTCTTAAGCTTAGTATAACTTTGTACTAGCTCTAGTACAAAGTTGATACAGTTATTTTGGGACGGAGGGAGTAT
dot-bracket secondary structure
(((((((((((((((((((((((..((....))....((((((((((((((((....)))))))))))).))))..)))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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GTACTCCCTCCGTCCCAAAATAAGTCTCTTAAGCTTAGTATAACTTTGTACTAGCTCTAGTACAAAGTTGATACAGTTATTTTGGGACGGAGGGAGTAT
dot-bracket secondary structure
(((((((((((((((((((((((..((....))....((((((((((((((((....)))))))))))).))))..)))))))))))))))))))))))
SIMILARITIES| miRBase osa-MIR1862c: 0.000001 PMRD hpr-miR1120: 0.00000008 microPC miR1439: 2e-51 | UniProt no hits RFAM MIR1122: 8e-33 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
