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ABOUT THIS RECORD
ID:
MNEST045994
species:
Hordeum vulgare
source:
microPC, original name:
miR1436
Taxonomy by NCBI:
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTATGGAACGGAGGGAGT
miRNA*
TTCCTCCGTTTCTAAATAT
mismatches:
2
bulges:
0
View larger
pre-miRNA
AC
TTCCTCCGTTTCTAAATAT
AAGTCTTTTAAGCGATTTCTCTAAAGGACTACATACAAAGCAAAATGAGTGAATCTACACTCTAAAGTATGTCTATATA
CATCCGTATGTAGTCCTCTAGTGGAATCTCTAAAAAGACTTAT
ATTATGGAACGGAGGGAGT
dot-bracket secondary structure
((
((((((((((((..(((((
(((((((((.((.((((((.(((.((((((((((((..........(((((......)))))....(((((....))))
)....)))))))))))).))).)))))).)).)))))))))))
)))..))))))))))))))
SIMILARITIES
miRBase
tae-MIR1122
:
7e-34
PMRD
tae-miR1122
:
7e-34
microPC
miR1126
:
4e-17
UniProt
no hits
RFAM
MIR1122: 3e-49
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
degradome data
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