ABOUT THIS RECORDspecies: Taraxacum officinale
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGTGCGCCATGAGAACACATG mismatches: 1 bulges: 2 |
pre-miRNA
CAGGTGCGCCATGAGAACACATGTGAAATGTACAATATATTAATTAGGTCATGTCATGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
((((.(((((.((((((((((((....(((.((...((....))...)))))..)))))))))))))).))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGGTGCGCCATGAGAACACATGTGAAATGTACAATATATTAATTAGGTCATGTCATGTGTTCTCAGGTCGCCCCTG
dot-bracket secondary structure
((((.(((((.((((((((((((....(((.((...((....))...)))))..)))))))))))))).))).))))
SIMILARITIES| miRBase vvi-MIR398c: 0.0000009 PMRD vvi-miR398c: 0.0000009 microPC miR398: 3e-37 | UniProt no hits RFAM MIR398: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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