ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR1439
source: microPC, original name: miR1439
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTGGGACGGAGGGAGTATT miRNA* TACTCCCTCCCGTGCCCAAAATA mismatches: 1 bulges: 2 |
pre-miRNA
ATACTCCCTCCCGTGCCCAAAATAAGTGAGTCACTTATTTTGGGACGGAGGGAGTATT
dot-bracket secondary structure
(((((((((((.((.(((((((((((((...)))))))))))))))))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATACTCCCTCCCGTGCCCAAAATAAGTGAGTCACTTATTTTGGGACGGAGGGAGTATT
dot-bracket secondary structure
(((((((((((.((.(((((((((((((...)))))))))))))))))))))))))).
SIMILARITIES| miRBase osa-MIR1862e: 0.000002 PMRD hpr-miR1120: 0.00000000004 microPC miR1439: 0.00000004 | UniProt no hits RFAM MIR1122: 0.0000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
