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ABOUT THIS RECORD

ID: MNEST046135
species: Hordeum vulgare
source: microPC, original name: miR171

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATAT

miRNA*
GTTGGCTCGACTCACTCAGA

mismatches: 3
bulges: 0

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pre-miRNA
ATGTTGGCTCGACTCACTCAGACCACGCCGGAGGGAGCCATCTGCGGCGGCGGTTCTGATTGAGCCGTGCCAATAT

dot-bracket secondary structure
((((((((.((.((((.(((((((.(((((.(((......))).)))))..)).))))).)))).)).))))))))


SIMILARITIES
miRBase hvu-MIR171: 8e-38

PMRD hvv-miR171: 8e-38

microPC miR171: 8e-38
UniProt no hits

RFAM MIR171_1: 0.000004

Identical with: hvv-miR171 from PMRD (MNEST048663)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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