ABOUT THIS RECORDspecies: Triticum turgidum subsp. durum
source: microPC, original name: miR1130
Taxonomy by NCBI:
Triticum turgidum subsp. durum Triticum turgidum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCCGTCCCATAATGTAAGAC miRNA* CTTACGTTATGGGACAGAGG mismatches: 1 bulges: 0 |
pre-miRNA
CCTCCGTCCCATAATGTAAGACATTTTTTGACATTACACTAGAGTCAAAAAACGTCTTACGTTATGGGACAGAGG
dot-bracket secondary structure
((((.(((((((((((((((((.(((((((((...........))))))))).))))))))))))))))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CCTCCGTCCCATAATGTAAGACATTTTTTGACATTACACTAGAGTCAAAAAACGTCTTACGTTATGGGACAGAGG
dot-bracket secondary structure
((((.(((((((((((((((((.(((((((((...........))))))))).))))))))))))))))).))))
SIMILARITIES| miRBase tae-MIR1130: 0.000003 PMRD tae-miR1130: 0.000003 microPC miR1436: 7e-23 | UniProt no hits RFAM MIR1122: 2e-17 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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