ABOUT THIS RECORDspecies: Hordeum vulgare
source: microPC, original name: miR1436
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTATGAGACGGAGGGAGT miRNA* TCCCTTCGGGCCATAAAAT mismatches: 2 bulges: 2 |
pre-miRNA
ACTCCCTTCGGGCCATAAAATAAGGACATTTTTGACACTATACTAGGGGCAAAAACGCTTTTATATTATGAGACGGAGGGAGT
dot-bracket secondary structure
((((((((((..((((((.(((((..(.((((((...(((...)))...)))))).)..))))).))))).).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ACTCCCTTCGGGCCATAAAATAAGGACATTTTTGACACTATACTAGGGGCAAAAACGCTTTTATATTATGAGACGGAGGGAGT
dot-bracket secondary structure
((((((((((..((((((.(((((..(.((((((...(((...)))...)))))).)..))))).))))).).))))))))))
SIMILARITIES| miRBase tae-MIR1120: 0.000004 PMRD tae-miR1120: 0.000004 microPC miR1439: 0.00000006 | UniProt no hits RFAM MIR1122: 0.000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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