ABOUT THIS RECORDspecies: Hordeum vulgare
source: microPC, original name: miR1133
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATACTCCATCCGTCCGAAA miRNA* CCGGATGGAGGGAGTATA mismatches: 2 bulges: 0 |
pre-miRNA
TATACTCCATCCGTCCGAAAATACTTGTCCTAGAAATAAATAAAATGGGTGTATTTATAACTAAAATAATTCTACATACATCTATTTTTAAGACAAGTAT
TTCCGGATGGAGGGAGTATA
dot-bracket secondary structure
((((((((.((((((((.(((((((((((.((....))...(((((((((((((.((...............)).)))))))))))))...)))))))))
)).)))))))).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TATACTCCATCCGTCCGAAAATACTTGTCCTAGAAATAAATAAAATGGGTGTATTTATAACTAAAATAATTCTACATACATCTATTTTTAAGACAAGTAT
TTCCGGATGGAGGGAGTATA
dot-bracket secondary structure
((((((((.((((((((.(((((((((((.((....))...(((((((((((((.((...............)).)))))))))))))...)))))))))
)).)))))))).))))))))
SIMILARITIES| miRBase tae-MIR1135: 0.0000001 PMRD tae-miR1128: 0.000000002 microPC miR1133: 3e-23 | UniProt no hits RFAM MIR1122: 1e-62 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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