ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIR403
source: microPC, original name: miR403
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCG miRNA* TGTTTGTGCGTGAATCTAAGG mismatches: 1 bulges: 0 |
pre-miRNA
CGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCACATCACCAGTAAGTAATCATACTTTTTCTTTGTCTGTTTGTTGCCAGACAGGATCTGTTGG
TTCGTTAGATTCACGCACAAACTCG
dot-bracket secondary structure
((.((((((((((((((((((.((.((...................((.(((((....)))))...))...((((((((....)))))))).......))
.)).)))))))))))))))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGTGTTTGTGCGTGAATCTAAGGATCCTTAATCTTATCACATCACCAGTAAGTAATCATACTTTTTCTTTGTCTGTTTGTTGCCAGACAGGATCTGTTGG
TTCGTTAGATTCACGCACAAACTCG
dot-bracket secondary structure
((.((((((((((((((((((.((.((...................((.(((((....)))))...))...((((((((....)))))))).......))
.)).)))))))))))))))))).))
SIMILARITIES| miRBase vvi-MIR403e: 0.000006 PMRD vvi-miR403e: 0.000006 microPC miR403: 8e-67 | UniProt no hits RFAM MIR403: 0.0001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
