ABOUT THIS RECORDspecies: Populus x canadensis
source: microPC, original name: miR530
Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCATCTT miRNA* GGTGCAGGTGCAAGTGCA mismatches: 1 bulges: 0 |
pre-miRNA
TGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATAGAGTG
TTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCA
dot-bracket secondary structure
.(((((((((((((((((((..((.((((((((((((.((....)).)))))))).))))...((((..(((.....))).)))).........((..((
((((.........))))))..))..)).))))))))))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATAGAGTG
TTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCA
dot-bracket secondary structure
.(((((((((((((((((((..((.((((((((((((.((....)).)))))))).))))...((((..(((.....))).)))).........((..((
((((.........))))))..))..)).))))))))))))))))))).
SIMILARITIES| miRBase ptc-MIR530b: 2e-52 PMRD ptc-miRf11519-akr: 2e-52 microPC miR1030: 5e-78 | UniProt no hits RFAM MIR530: 4e-51 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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