ABOUT THIS RECORDspecies: Populus euphratica
source: microPC, original name: miR398
Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCT miRNA* GAGCGACCTGGAATACATG mismatches: 1 bulges: 1 |
pre-miRNA
AGGAGCGACCTGGAATACATGTGGGCTCCACCCTCCTGGGTTCTCTTGGGCAACATGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
(((.((((((((((((((((((..((((.((((....))))......)))).)))))))))).)))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGAGCGACCTGGAATACATGTGGGCTCCACCCTCCTGGGTTCTCTTGGGCAACATGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
(((.((((((((((((((((((..((((.((((....))))......)))).)))))))))).)))))))).)))
SIMILARITIES| miRBase ptc-MIR398c: 2e-23 PMRD ptc-miR398c: 2e-23 microPC miR398: 3e-37 | UniProt no hits RFAM MIR398: 0.0000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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