ABOUT THIS RECORDspecies: Populus tremula x Populus alba
source: microPC, original name: miR398
Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCT miRNA* GAGCGACCTGAAATCACATG mismatches: 4 bulges: 0 |
pre-miRNA
AGGAGCGACCTGAAATCACATGTGGGCTGCACGGCAACATGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
(((.(((((((((...(((((((..(((....))).)))))))...))))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
AGGAGCGACCTGAAATCACATGTGGGCTGCACGGCAACATGTGTTCTCAGGTCGCCCCT
dot-bracket secondary structure
(((.(((((((((...(((((((..(((....))).)))))))...))))))))).)))
SIMILARITIES| miRBase ptc-MIR398c: 0.00000000001 PMRD ptc-miR398c: 0.00000000001 microPC miR398: 8e-28 | UniProt no hits RFAM MIR398: 1e-26 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
