ABOUT THIS RECORDspecies: Hordeum vulgare
source: microPC, original name: miR166
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGACCAGGCTTCATTCCC miRNA* GAATGTTGTCTGGTCCGAG mismatches: 2 bulges: 0 |
pre-miRNA
GGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((((((((((((..((((.(((.((((.....)))).(((.......)))..))).))))..))))))))))))))))..)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGAATGTTGTCTGGTCCGAGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCC
dot-bracket secondary structure
(((((((..((((((((((((((((..((((.(((.((((.....)))).(((.......)))..))).))))..))))))))))))))))..)))))))
SIMILARITIES| miRBase osa-MIR166c: 5e-52 PMRD osa-miR166c: 5e-52 microPC miR166: 5e-52 | UniProt no hits RFAM mir-166: 9e-51 |
Identical with: osa-miR166c from PMRD (MNEST048846) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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