ABOUT THIS RECORDspecies: Hordeum vulgare
miRNA family: MIR444
source: microPC, original name: miR444
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTGTTGCCTCATGCTT miRNA* GCTTGAGACAGCAACTGCACA mismatches: 2 bulges: 0 |
pre-miRNA
AAGCTTGAGACAGCAACTGCACAACTTGCAAGAAAGTCACGATTATGAAGACCCATAGATTTTGTAACTTCCTTGAAAGTAATGCAGTTGTTGCCTCATG
CTT
dot-bracket secondary structure
((((.((((.(((((((((((..((((.((((.((((.(((((((((......)))))...)))).)))).)))).))))..))))))))))).)))).)
)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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AAGCTTGAGACAGCAACTGCACAACTTGCAAGAAAGTCACGATTATGAAGACCCATAGATTTTGTAACTTCCTTGAAAGTAATGCAGTTGTTGCCTCATG
CTT
dot-bracket secondary structure
((((.((((.(((((((((((..((((.((((.((((.(((((((((......)))))...)))).)))).)))).))))..))))))))))).)))).)
)))
SIMILARITIES| miRBase hvu-MIR444b: 9e-54 PMRD tae-miR2024a: 3e-44 microPC miR444: 3e-44 | UniProt no hits RFAM MIR444: 0.000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
