ABOUT THIS RECORDspecies: Helianthus tuberosus
miRNA family: MIR162
source: microPC, original name: miR162
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCA miRNA* GATTCAGCGGTTCATCGATC mismatches: 4 bulges: 0 |
pre-miRNA
TGGATTCAGCGGTTCATCGATCTGTTCCATAATCCTAATGATTGAATTTCATACGACGATTGAGAGAGAGATACGGGAAAAGGAATCGATCGATAAACCT
CTGCATCCA
dot-bracket secondary structure
.((((.(((.((((.(((((((.(((((....((((....(((...(((((.........)))))....)))..))))...))))).))))))).)))).
))).)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGGATTCAGCGGTTCATCGATCTGTTCCATAATCCTAATGATTGAATTTCATACGACGATTGAGAGAGAGATACGGGAAAAGGAATCGATCGATAAACCT
CTGCATCCA
dot-bracket secondary structure
.((((.(((.((((.(((((((.(((((....((((....(((...(((((.........)))))....)))..))))...))))).))))))).)))).
))).)))).
SIMILARITIES| miRBase sbi-MIR162: 0.000000005 PMRD sly-miR162: 0.000000005 microPC miR162: 3e-57 | UniProt no hits RFAM MIR162_2: 0.0000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
