ABOUT THIS RECORDspecies: Hordeum vulgare
source: microPC, original name: miR1133
Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATACTCCCTCCGTCCGAAA miRNA* CCGGACGGAGGGAGTA mismatches: 2 bulges: 0 |
pre-miRNA
ATACTCCCTCCGTCCGAAAATAGTTGTCTTCGAAATGAATGTATCTAGACTTAATTNTAGTTATAGATACATCCATTNTATTTATTTCTAGGACAAGTAT
TTCCGGACGGAGGGAGTA
dot-bracket secondary structure
.(((((((((((((((.(((((.(((((((.((((((((((((((((((((.......)))).))))))))).........))))))).))))))).)))
)).)))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
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ATACTCCCTCCGTCCGAAAATAGTTGTCTTCGAAATGAATGTATCTAGACTTAATTNTAGTTATAGATACATCCATTNTATTTATTTCTAGGACAAGTAT
TTCCGGACGGAGGGAGTA
dot-bracket secondary structure
.(((((((((((((((.(((((.(((((((.((((((((((((((((((((.......)))).))))))))).........))))))).))))))).)))
)).)))))))))))))))
SIMILARITIES| miRBase tae-MIR1128: 0.00000002 PMRD ata-miR1122: 1e-16 microPC miR1128: 2e-58 | UniProt no hits RFAM MIR1122: 6e-31 |
Identical with: miR1128 from microPC (MNEST045821) |
MOREmiRNEST target predictions
non-miRNEST targets: none
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