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ABOUT THIS RECORD

ID: MNEST046621
species: Hordeum vulgare
source: microPC, original name: miR166

Taxonomy by NCBI:
Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCC

miRNA*
 GAATGTTGTCTGGCTCGGGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 GGGAATGTTGTCTGGCTCGGGGTTCTCTTTCTTTCTCTCTCTCTCTATCTTCCTCCCCTCGGTCGATCCCTCCATGATCAGATCAAAGATCCGATGAGGG
GGGAGAGGAGAGTGAACGTGCGTAGATCTCGGACCAGGCTTCATTCCC

dot-bracket secondary structure
(((((((..((((((..(((((((..(...(.(((.(((((.((((......(((((((((...((((.......)))).((((...))))...))))))
)))))))))))).))).)...)..)))))))..))))))..)))))))


SIMILARITIES
miRBase zma-MIR166a: 0.00000003

PMRD zma-miR166a: 0.00000003

microPC miR166: 5e-53		UniProt no hits

RFAM mir-166: 1e-51

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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