ABOUT THIS RECORDspecies: Helianthus tuberosus
source: microPC, original name: miR319
Taxonomy by NCBI:
Helianthus tuberosus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGGGAGCTC miRNA* GCTCCTTAAAGTCCAATA mismatches: 2 bulges: 0 |
pre-miRNA
GAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTATAGGCTTTGTGGC
TTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.(((.((((((((.(((...((((((((.(.(((.((((.(..((.((((.((((((.........).))))).)))).)).
.).)))).))).).))))))))....))))))).)))).))).)))))))..)))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GAGCTCCTTAAAGTCCAATAGAAGATCTGAGTGAGAACATAGAGCTGCTAGTTTATGGATCCCTCAAGTCCTATCTTTGTTGATGTATAGGCTTTGTGGC
TTGCATACACTTGGAGCTTTATTACCCTCCTTATGATCCTTTTTTGGATTGAAGGGAGCTC
dot-bracket secondary structure
(((((((((..(((((((.(((.((((((((.(((...((((((((.(.(((.((((.(..((.((((.((((((.........).))))).)))).)).
.).)))).))).).))))))))....))))))).)))).))).)))))))..)))))))))
SIMILARITIES| miRBase sly-MIR159: 0.000002 PMRD sly-miR159: 0.000002 microPC miR159: 4e-88 | UniProt no hits RFAM MIR159: 0.00004 |
Identical with: miR159 from microPC (MNEST045888) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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