ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR808
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAATATGGGAAATGTTAGAA miRNA* CTGGCATTTCTCATATTCATAT mismatches: 1 bulges: 0 |
pre-miRNA
TTCTGGCATTTCTCATATTCATATTGATGCTAACGAATCTAGACATATATATCCATCTAGATTCATTAACATTAATATGAATATGGGAAATGTTAGAA
dot-bracket secondary structure
.((((((((((((((((((((((((((((.(((.(((((((((............))))))))).))).)))))))))))))))))))))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
TTCTGGCATTTCTCATATTCATATTGATGCTAACGAATCTAGACATATATATCCATCTAGATTCATTAACATTAATATGAATATGGGAAATGTTAGAA
dot-bracket secondary structure
.((((((((((((((((((((((((((((.(((.(((((((((............))))))))).))).)))))))))))))))))))))))))))).
SIMILARITIES| miRBase osa-MIR808: 9e-26 PMRD osa-miR808: 9e-26 microPC miR809: 8e-51 | UniProt no hits RFAM MIR1122: 7e-27 |
Identical with: miR809 from microPC (MNEST045342) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
