ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR396
source: microPC, original name: miR396
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAACTG miRNA* GTTCAAGAAAGTCCTTGGA mismatches: 2 bulges: 0 |
pre-miRNA
TCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTA
GGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGA
dot-bracket secondary structure
((((..((((((((((((((((.(((..(((((((.........))))))).......(((((.......(((((.(((((((.((((((((....))))
))))))))))).))))).)))))........))).))))))))))))))))..))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
TCCACAGGCTTTCTTGAACTGTGAACTCGTGTGTGCATGCTCCTCATATATTGTTCTAGATCCCATGCATGATGCATATCGATCGATCTGATCTGAATTA
GGTCATCGATGCGCATCTGGATCCCCATCTTGTTGATAGTTCAAGAAAGTCCTTGGA
dot-bracket secondary structure
((((..((((((((((((((((.(((..(((((((.........))))))).......(((((.......(((((.(((((((.((((((((....))))
))))))))))).))))).)))))........))).))))))))))))))))..))))
SIMILARITIES| miRBase osa-MIR396f: 8e-86 PMRD osa-miR396f: 8e-86 microPC miR396: 0.000000002 | UniProt no hits RFAM MIR396: 2e-84 |
Identical with: osa-MIR396f from miRBase (MNEST042032) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
