ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR808
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAATGTGGGAAATGTTAGAA miRNA* CTAGCATTTTTCGCATTCATAT mismatches: 3 bulges: 0 |
pre-miRNA
TTCTAGCATTTTTCGCATTCATATTTGATGTTAATAAATCTAGATAGATATATATTTTAGATTCATTAACATCAATATGAATGTGGGAAATGTTAGAA
dot-bracket secondary structure
.((((((((((..((((((((((((.(((((((((.((((((((...........)))))))).)))))))))))))))))))))..)))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
TTCTAGCATTTTTCGCATTCATATTTGATGTTAATAAATCTAGATAGATATATATTTTAGATTCATTAACATCAATATGAATGTGGGAAATGTTAGAA
dot-bracket secondary structure
.((((((((((..((((((((((((.(((((((((.((((((((...........)))))))).)))))))))))))))))))))..)))))))))).
SIMILARITIES| miRBase osa-MIR808: 6e-30 PMRD osa-miR808: 6e-30 microPC miR809: 8e-51 | UniProt no hits RFAM MIR1122: 1e-28 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
