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ABOUT THIS RECORD

ID: MNEST046785
species: Oryza sativa
miRNA family: MIR393
source: microPC, original name: miR393

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC

miRNA*
TCAGTGCAATCCCTTTGGA

mismatches: 1
bulges: 0

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pre-miRNA
TCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCATAATCGATCAGTGCAATCCCTTTGGA

dot-bracket secondary structure
(((((((((((.(((((((((.(..((((..(((((.(((((((......)))))))))).))...)).))..)))))))))).)))))))))))


SIMILARITIES
miRBase osa-MIR393b: 3e-44

PMRD osa-miR393b: 3e-44

microPC miR393: 5e-49
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence





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