ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1425
source: microPC, original name: miR1425
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGGATTCAATCCTTGCTGCT miRNA* CAGCAAGAACTGGATCTTA mismatches: 3 bulges: 0 |
pre-miRNA
TAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTA
dot-bracket secondary structure
(((((((((...(((((((((((.(((((((((.......)))))))))...)).)))))))))...)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
TAGGATTCAATCCTTGCTGCTAAATGTATTGCTTATATTCAGCAATATAATGTTCAGCAGCAAGAACTGGATCTTA
dot-bracket secondary structure
(((((((((...(((((((((((.(((((((((.......)))))))))...)).)))))))))...)))))))))
SIMILARITIES| miRBase osa-MIR1425: 8e-38 PMRD osa-miR1425: 8e-38 microPC no hits | UniProt no hits RFAM no hits |
Identical with: osa-MIR1425 from miRBase (MNEST042200) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
