ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
GGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCC
dot-bracket secondary structure
((((((..((((((..((((((.((.((((....))))((((((......)))))).........))))))))..))))))..))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
GGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGGCTTCATTCC
dot-bracket secondary structure
((((((..((((((..((((((.((.((((....))))((((((......)))))).........))))))))..))))))..))))))
SIMILARITIES| miRBase osa-MIR166d: 2e-45 PMRD osa-miR166d: 2e-45 microPC miR166: 2e-45 | UniProt no hits RFAM mir-166: 3e-44 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
