ABOUT THIS RECORDspecies: Lotus japonicus
source: microPC, original name: miR167
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCT miRNA* ATCATATGGCAGCTTCA mismatches: 2 bulges: 1 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGAGCTTACCTTCTTGTAATAATGGTAAGAACAGATCATATGGCAGCTTCA
dot-bracket secondary structure
.((((((((((..((((((((..((((((.............))))))..)))))))).)))))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGAAGCTGCCAGCATGATCTGAGCTTACCTTCTTGTAATAATGGTAAGAACAGATCATATGGCAGCTTCA
dot-bracket secondary structure
.((((((((((..((((((((..((((((.............))))))..)))))))).)))))))))).
SIMILARITIES| miRBase lja-MIR167: 3e-34 PMRD lja-miR167: 3e-34 microPC miR167: 3e-34 | UniProt no hits RFAM MIR167_1: 0.0000009 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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