ABOUT THIS RECORDspecies: Oryza sativa
source: microPC, original name: miR446
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCAATATGAATGTGGAAAATG miRNA* ATTTCTAATATATTGATGTT mismatches: 4 bulges: 3 |
pre-miRNA
ATTTCTAATATATTGATGTTAATGAATCTAGACATACATATCTATCTAAATTCATTAACATCAATATGAATGTGGAAAATG
dot-bracket secondary structure
.((((((.(((((((((((((((((((.((((............)))).)))))))))))))))))))....))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATTTCTAATATATTGATGTTAATGAATCTAGACATACATATCTATCTAAATTCATTAACATCAATATGAATGTGGAAAATG
dot-bracket secondary structure
.((((((.(((((((((((((((((((.((((............)))).)))))))))))))))))))....))))))...
SIMILARITIES| miRBase osa-MIR808: 1e-30 PMRD osa-miR808: 1e-30 microPC miR809: 5e-24 | UniProt no hits RFAM MIR1122: 3e-25 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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