ABOUT THIS RECORDspecies: Allium cepa
miRNA family: MIR171
source: PMRD, original name: ace-miR170c
Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* GGGTTGCCAGCTTCTAGAA mismatches: 8 bulges: 5 |
pre-miRNA
TGATTGAGCCGCGCCAATATCTCACGCGCAGTGAAAGGGTTGCCAGCTTCTAGAA
dot-bracket secondary structure
.....((((.(((((....(.((((.....)))).).)).)))..))))......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGATTGAGCCGCGCCAATATCTCACGCGCAGTGAAAGGGTTGCCAGCTTCTAGAA
dot-bracket secondary structure
.....((((.(((((....(.((((.....)))).).)).)))..))))......
SIMILARITIES| miRBase bdi-MIR171a: 0.0000001 PMRD ace-miR171a: 0.00000004 microPC miR171: 0.0001 | UniProt no hits RFAM MIR171_1: 0.00001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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