ABOUT THIS RECORDspecies: Allium cepa
miRNA family: MIR171
source: PMRD, original name: ace-miR171a
Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* ACGGGCGCCTATAATATTTCTAGATTCGATGAATTCAGCAGCCTTGAACAACTGACCAGCTAAA mismatches: 9 bulges: 49 |
pre-miRNA
TGATTGAGCCGCGCCAATATCTCACGGGCGCCTATAATATTTCTAGATTCGATGAATTCAGCAGCCTTGAACAACTGACCAGCTAAATC
dot-bracket secondary structure
.((((.(((.(((((...........)))))...........((..((((...))))..))....................))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGATTGAGCCGCGCCAATATCTCACGGGCGCCTATAATATTTCTAGATTCGATGAATTCAGCAGCCTTGAACAACTGACCAGCTAAATC
dot-bracket secondary structure
.((((.(((.(((((...........)))))...........((..((((...))))..))....................))).))))
SIMILARITIES| miRBase bdi-MIR171a: 0.000001 PMRD ace-miR170a: 2e-45 microPC miR171: 0.0003 | UniProt no hits RFAM MIR171_1: 0.00002 |
Identical with: ace-miR170a from PMRD (MNEST046847) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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