ABOUT THIS RECORDspecies: Hordeum vulgare subsp. spontaneum
source: PMRD, original name: hvs-miR156
Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum Hordeum vulgare Hordeum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAC miRNA* GCTGAAGCTCATCTGGTCT mismatches: 6 bulges: 1 |
pre-miRNA
TGACAGAAGAGAGAGAGCACAGTCGGAGTCGAGCACGTGCGTCAACTGTCCATCGGAGAACATCTTGTTGCTGCTGCTGCTCTCGGGCGGCGGCGGCAGC
GGGGCGACGGCCTTGAGGAGAGGCTGGCACACGGGGATCTCGAGTGCCGGCGCGCCGGTGCTGAAGCTCATCTGGTCT
dot-bracket secondary structure
.((((((.(((....(((((.((((((.(((((..((((.((((.((.(((.((((....(..((((((((((((((((((....)))))))))))))))
)))..)....))..))))).))..)))).)))).....))))).).)))))......)))))....))).))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACAGAAGAGAGAGAGCACAGTCGGAGTCGAGCACGTGCGTCAACTGTCCATCGGAGAACATCTTGTTGCTGCTGCTGCTCTCGGGCGGCGGCGGCAGC
GGGGCGACGGCCTTGAGGAGAGGCTGGCACACGGGGATCTCGAGTGCCGGCGCGCCGGTGCTGAAGCTCATCTGGTCT
dot-bracket secondary structure
.((((((.(((....(((((.((((((.(((((..((((.((((.((.(((.((((....(..((((((((((((((((((....)))))))))))))))
)))..)....))..))))).))..)))).)))).....))))).).)))))......)))))....))).))).))).
SIMILARITIES| miRBase far-MIR156b: 0.000009 PMRD hvv-miR156c: 7e-96 microPC miR157: 0.0001 | UniProt sp|Q6YZE8|SPL16_ORYSJ: 0.0000002 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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