miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST048650
species:
Hordeum vulgare subsp. spontaneum
source:
PMRD, original name:
hvs-miR156
Taxonomy by NCBI:
Hordeum vulgare subsp. spontaneum
Hordeum vulgare
Hordeum
Triticeae
Pooideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCAC
miRNA*
GCTGAAGCTCATCTGGTCT
mismatches:
6
bulges:
1
View larger
pre-miRNA
TGACAGAAGAGAGAGAGCAC
AGTCGGAGTCGAGCACGTGCGTCAACTGTCCATCGGAGAACATCTTGTTGCTGCTGCTGCTCTCGGGCGGCGGCGGCAGC
GGGGCGACGGCCTTGAGGAGAGGCTGGCACACGGGGATCTCGAGTGCCGGCGCGCCGGT
GCTGAAGCTCATCTGGTCT
dot-bracket secondary structure
.((((((.(((....(((((
.((((((.(((((..((((.((((.((.(((.((((....(..((((((((((((((((((....)))))))))))))))
)))..)....))..))))).))..)))).)))).....))))).).)))))......))
)))....))).))).))).
SIMILARITIES
miRBase
far-MIR156b
:
0.000009
PMRD
hvv-miR156c
:
7e-96
microPC
miR157
:
0.0001
UniProt
sp|Q6YZE8|SPL16_ORYSJ: 0.0000002
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record